Issue With Annotations Usage Issues Image Sc Forum I have annotated a bunch of jpeg images, and mid annotation, i converted them to png images. i edited the qproj file and changed the path of the uri to the new folder containing the pngs, but there was some issue with the annotation so i reverted it. After checking the columns of annotated data, one of them had the same name as another one causing the issue. so, i was able to modify it and retrained the system.
Export Annotations Image Analysis Image Sc Forum I am using braian in qupath with some good success but ran into a weird problem. i realized i did something wrong so had to go back, reload the abba annotations, and re run the compute classify overlap export… script. however, this time it is not exporting my results or regions to exclude. Dear qupath scripting aficionados, using version 0.2.2, i am trying to export the xy coordinates of the annotations (tumor boundary) and the xy coordinates of the positive cells for downstream analysis. Hello, thanks for the new features in qupath v0.4. i think there is a problem with the “transform annotations” command. annotation rotation doesn’t seem to be applied when i select “selected object”. “all objects” and the rotate annotation in qupath v0.3 work fine. could it be a bug?. Hello, i wrote these two functions to exchange annotations between projects machines. basically i have a collaborator who outlines rois a few at a time, and i need to import those rois into my project.
Issue With Subtracting Annotations Created By Watershed Cell Detection Hello, thanks for the new features in qupath v0.4. i think there is a problem with the “transform annotations” command. annotation rotation doesn’t seem to be applied when i select “selected object”. “all objects” and the rotate annotation in qupath v0.3 work fine. could it be a bug?. Hello, i wrote these two functions to exchange annotations between projects machines. basically i have a collaborator who outlines rois a few at a time, and i need to import those rois into my project. Hi @rebeccac , make sure that you have the show annotation button (shortcut a) on! you can find it here: also, to make qupath show the name of your annotations, click view > show names (shortcut n):. Discussion of any software packages in the imaging ecosystem is equally welcome—the goal here is inclusivity. our mission 37 is for people to be able to ask "how do i do x?" without prior knowledge of these various software programs. see the guidelines 153 for further information. This community page article introduces the scientific community imaging forum, where users can pose both software specific questions, as well as more general questions about digital image acquisition, analysis, and data management. Official help center where you can find tips and tutorials on using and other answers to frequently asked questions.
Qupath Export Annotations Problem Usage Issues Image Sc Forum Hi @rebeccac , make sure that you have the show annotation button (shortcut a) on! you can find it here: also, to make qupath show the name of your annotations, click view > show names (shortcut n):. Discussion of any software packages in the imaging ecosystem is equally welcome—the goal here is inclusivity. our mission 37 is for people to be able to ask "how do i do x?" without prior knowledge of these various software programs. see the guidelines 153 for further information. This community page article introduces the scientific community imaging forum, where users can pose both software specific questions, as well as more general questions about digital image acquisition, analysis, and data management. Official help center where you can find tips and tutorials on using and other answers to frequently asked questions.
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